Glyma18g12720 - SoyBase

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Report for Sequence Feature Glyma18g12720

Feature Type:	gene_model
Chromosome:	Gm18
Start:	11933971
stop:	11940663
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g12720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42880	AT	Annotation by Michelle Graham. TAIR10: MAP kinase 20 \| chr2:17840572-17843947 REVERSE LENGTH=606	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004707	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0660	KOG	Mitogen-activated protein kinase	JGI		ISS
PTHR24055	Panther	MITOGEN-ACTIVATED PROTEIN KINASE	JGI		ISS
PTHR24055:SF69	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J5K8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitogen activated protein kinase 20-4 n=3 Tax=Medicago truncatula RepID=G7J5K8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N0W7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0W7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g12720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g12720

Paralog	Evidence	Comments
Glyma08g42240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g12720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g106800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g12720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g12720

Limit To All Plant Sequences

>Glyma18g12720.1   sequence type=CDS   gene model=Glyma18g12720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAAGATCACAGGAAAAAGAGTTCAGCTGAGATGGACTTTTTCTCCGAATATGGTGATGCCAACCGGTACAAAATTCAAGAAGTCATTGGGAAGGGAAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCACACAGGTGAAAAAGTGGCAATTAAGAAGATTCATGACATCTTCGAGCATATATCTGATGCTGCTCGTATTCTCCGTGAGATAAAGCTGCTTAGACTTCTACGACATCCTGATATTGTTGAAATAAAACACATTATGCTGCCTCCGTCAAGGAAGGACTTTAAAGATATTTACGTTGTTTTTGAGCTCATGGAGTCTGATCTTCATCAAGTCATTAAAGCCAATGATGACTTGACAAAAGAACACTATCAGTTTTTTCTTTACCAATTACTTCGAGCACTGAAGTACATTCACACGGCAAATGTCTATCATCGAGATTTGAAGCCAAAGAATATACTTGCTAATGCGAACTGTAAGCTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCCTTCAGTGACACACCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAACTATGTGGATCATTTTACTCTAAGTATACACCAGCAATTGATATATGGAGTATAGGTTGCATCTTTGCTGAAGTACTAACAGGAAAGCCACTTTTTCCTGGGAAAAATGTAGTTCATCAATTGGATCTGATGACAGATCTGCTTGGAACTCCTTCACTAGATACTATATCTCGGGTACGTAATGAGAAGGCAAGGAGATACCTAACTAGCATGAGGAAAAAGCAGCCTGTGCCATTTGCTCAAAAATTTCCCAATGCAGACCCTTTAGCACTAAGGCTACTGGAAAAGTTGTTGGCTTTTGATCCAAAAAACCGACCTACTGCTGAAGAGGCTTTGGCTGATCCTTACTTCAAGGGACTGGCAAAAGTTGAGAGGGAACCATCCTGCCAACCTATCACGAAAATGGAATTTGAATTTGAAAGACGAAGAGTCACAAAGGAAGAAATTCGAGAGCTGATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATGAATGGAACAGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTCCGAAAGCAGTTTGCTCATCTTGAGGAAAATGGTAAAAATGGCCCTGTTATGCCACTTGATAGAAAGCATGTTTCTCTTCCAAGGTCAACAATTGTACATTCAAATACAGTACACCCAAAAGAGCAAACAAATATTGCTTCCAGCAAAAACCGACCAACAGCCGAGGAATATAACAAGCACCCCAGGGATACAGAAATTCCAGTGCCTAGGTCAATGCAGGGACCACAAAGAATTCCACTAGCAAAACCTGGAAAAGTTGTTGGGCCCGTTGTTCCTTACGAGTACGGTAACATTGTCAAGGATTCATATGATCCTAGGTCATTTATCAGAGGTTCTGTGCTTCCTACACAACCTGTTCCCCCAGCATATTATTATCAAAGATCCAGCACTGGAAACCAAGAAAGGCCATCAACAGAAGCTGACAAGAGTGTGCCTTTGCAGGCAAAACATGCACAACAATGTGGAGTTAATGCCAAGATGGCACCAGATATAGCTATTAATATTGATACAAATCCCTTTTTTATGACCAGGGCAGGAGTTAACAAGTTAGAGCAAGGTGATCAAATAGCCATAGAGACAAACATGCTGCAGCCAAAGGCACATCAATATGGTGGAATCAGTGCTGCAGCTGGGGCCACTGCTCATAGAAAAGTTGGTCCTGTTCAGTATGGTATGACAAGAATGTTTTAG

Predicted protein sequences of Glyma18g12720

Limit To All Plant Sequences

>Glyma18g12720.1   sequence type=predicted peptide   gene model=Glyma18g12720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQDHRKKSSAEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLEKLLAFDPKNRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVMPLDRKHVSLPRSTIVHSNTVHPKEQTNIASSKNRPTAEEYNKHPRDTEIPVPRSMQGPQRIPLAKPGKVVGPVVPYEYGNIVKDSYDPRSFIRGSVLPTQPVPPAYYYQRSSTGNQERPSTEADKSVPLQAKHAQQCGVNAKMAPDIAINIDTNPFFMTRAGVNKLEQGDQIAIETNMLQPKAHQYGGISAAAGATAHRKVGPVQYGMTRMF*

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